logml.report.plotters.gsa

Functions

create_volcano_plot(data, **kwargs)

Plots volcano plot using a given dataframe.
logml.report.plotters.gsa.create_volcano_plot(data: pandas.core.frame.DataFrame, **kwargs)

Plots volcano plot using a given dataframe.

Expected columns:

  • ‘p-value’ - contains raw P-values.

  • ‘log_fc’ - contains result Log Fold Change values.

  • ‘id’ - gene or signature identifiers.

Expected kwargs:

  • p_value_threshold: float - for coloring markers.

  • log_fc_threshold: float - for coloring markers.